Nasal swab tests predict COVID-19 disease severity

A wide variety of COVID-19 symptoms exist, ranging from mild to severe, and while current strains of the virus generally cause milder symptoms, those with co-morbidities are still at an exponentially greater risk of severe disease. Now, new research from Emory University is providing a more precise prediction of COVID-19 severity that can be found by looking at autoantibodies in the nasal cavity, leading to more personalized treatment plans. For high-risk individuals, this could provide critical information to inform immediate treatment options, including quickly taking medications like Paxlovid within one week of symptoms to mitigate a severe response.

The study, published in Science Translational Medicine, followed 125 patients with varying levels of COVID-19 (from mild to severe) for nearly two years. They tracked antibodies in both the blood and nasal airways, finding that more than 70% of people with mild or moderate COVID-19 developed certain autoantibodies – generally an indication of disease – in the nose that were surprisingly linked to fewer symptoms, better antiviral immunity, and faster recovery.

The findings suggest that the presence of autoantibodies in the nose can play a protective role and help regulate the immune system to prevent excessive inflammation and fight off the virus more effectively.

“Generally, autoantibodies are associated with pathology and a negative prognosis, causing increased inflammation that would indicate more severe disease,” says Eliver Ghosn, senior author on the paper and faculty member of the Lowance Center for Human Immunology and Emory Vaccine Center. “What’s interesting about our findings is that with COVID-19, it’s the opposite. The nasal autoantibodies showed up soon after infection, targeting an important inflammatory molecule produced by the patient’s cells. These autoantibodies latched on to the molecule, likely to prevent excessive inflammation, and faded as people recovered, suggesting the body uses them to keep things in balance.”

Previous studies on COVID-19 patients have suggested that autoantibodies in the blood predispose them to life-threatening disease. However, these studies often neglect the nose – the actual site of infection. The new study suggests that the immune responses mounted in the nose against the virus differ from those in the blood. In short, nasal autoantibodies equal protection, whereas autoantibodies found in the blood equal severity.

“The key to this puzzle was to look directly at the site of infection, in the nose, instead of the blood,” says Ghosn. “While autoantibodies in the blood were linked to bad prognosis, producing them only in the nose soon after infection is linked to efficient recovery.”

FlowBEAT: A more efficient diagnostic tool

To allow more precise measurements of antibodies produced locally in the nasal site of infection, the Ghosn lab developed a new biotechnology tool called FlowBEAT to quantify different types of antibodies in nasal cavities and other biological samples, which could soon have implications for the testing of other respiratory viruses, like flu or RSV.

“Historically, the technology to measure antibodies has low sensitivity and is inefficient since they are limited to measuring one or a few antibodies at a time,” says Ghosn. “With FlowBEAT, we can take any standard nasal swab and perform a combination test to simultaneously measure all human antibody types against dozens of viral and host antigens in a single tube – a much more sensitive, efficient, and scalable way to measure for autoantibodies in the nose that can also predict the severity of symptoms.”

Next, the researchers want to find out whether this surprising mechanism to control COVID-19 infection in the nose also plays a role in other respiratory infections like flu and RSV.

“If this nasal autoantibody response turns out to be a common mechanism to protect us against other viral infections, it can be a paradigm shift in how we study protective immunity,” says Ghosn. “We will interpret autoantibodies through an innovative lens, hopefully inspiring new lines of research and better therapeutic options for common respiratory infections.”

Based on their findings, the Ghosn Lab is currently working with Emory’s patent office to develop a predictive diagnostic tool using “leftover” samples from standard nasal swabs widely used as a diagnostic test for COVID-19.

“Right now, we’re either looking at infection risk before it happens or analyzing the infection course well after recovery,” says Ben Babcock, a PhD candidate who led the study in the Ghosn Lab. “Imagine if we could capture the immune response in real-time, right in the clinic. A just-in-time test could give physicians and patients the real-time information they need to make faster, smarter treatment decisions.”

This study was part of a large collaboration between the Ghosn Lab at Emory and Drs. Sulggi Lee  from UCSF and Nadia Roan from Gladstone Institutes, and in partnership with Emory laboratories of Drs. F. Eun-Hyung Lee, Iñaki Sanz, and Rabin Tirouvanziam.

CITATION: Babcock et al. Transient anti-interferon autoantibodies in the airways are associated with recovery from COVID-19. Science Translational Medicine. 10.1126/scitranslmed.adq1789

FUNDING: This work was supported by the NIH’s National Institute of Allergy and Infectious Diseases (NIAID) awards R21AI167032, R01AI123126-05S1 and National Cancer Institute (NCI) award U54 CA260563 Emory SeroNet; COVID Fast Grant from Emergent Ventures at the Mercatus Center; and the Program for Breakthrough Biomedical Research Award. Ben Babcock was partially supported by the American Society of Hematology (ASH).

Journal: Science Translational Medicine
Method of Research: Experimental study
Subject of Research: People
Article Title: Transient anti-interferon autoantibodies in the airways are associated with recovery from COVID-19.
Article Publication Date: 6-Nov-2024